Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7575241 chr2:135768352 C/A 0.000258 175 25.87 26.57 10.3 KM Plot
PCPG rs75754909 chr12:56726349 A/G 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs7576676 chr2:107243041 G/A 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs75770997 chr8:11513636 A/C 0.000428 178 25.17 25.87 19.93 KM Plot
PCPG rs7577426 chr2:24313687 G/T 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs75780010 chr10:102308800 G/T 0.000361 175 24.1 27.75 21.55 KM Plot
PCPG rs7578775 chr2:242531522 A/G 4.24E-5 178 19.75 29.57 25.87 KM Plot
PCPG rs7580021 chr2:242556732 G/A 4.04E-5 178 25.87 26.47 20.2 KM Plot
PCPG rs7580246 chr2:242557019 G/A 4.04E-5 178 25.87 26.47 20.2 KM Plot
PCPG rs75805443 chr7:105162828 A/G 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs75809680 chr20:10636324 C/T 0.000222 170 24.23 31.9 14.28 KM Plot
PCPG rs7581110 chr2:2659311 G/A 1.17E-8 175 26.57 13.4 3.63 KM Plot
PCPG rs7583766 chr2:242529451 C/T 4.83E-5 176 25.87 25.67 20.2 KM Plot
PCPG rs75852966 chr2:121545713 G/A 0.000238 175 25.53 24.37 59.77 KM Plot
PCPG rs7586618 chr2:11031548 A/G 6.7E-7 178 25.28 26.88 8.82 KM Plot